(part of Steps Toward Molecular Manufacturing)
MBB Conclusions:
To construct molecular machine
components, it is necessary to put emphasis on building extended,
three-dimensional lattices with arbitrary and irregular sequences of
MBBs, yet adhering to regular overall rasters for easy
designability. Once this is routinely achievable, it is then easy to
design and obtain isolated components by introducing special
surface-MBBs, which terminate the ability for lattice-extension at
appropriate locations and provide the desirable surface
structure. Conceptually speaking, the individual components are cut
out from an infinitely extended lattice, and the dangling bonds at the
boundaries have to be satisfied with capping-MBBs.
A complication arises through the
need for positional control while assembling lattices with
idiosyncratic stacking patterns. A modified AFM suitable for the task
seems within short term experimental reach, but has not yet been
demonstrated. Avoiding the necessity of introducing positional control
can only be accomplished if the MBBs carry a sufficient amount of
encoded distinguishing-information with them, implemented as surface
patterns of functional groups. This could allow preprogrammed,
structure-directed self-assembly to take place.
Obviously, the amount of
information which can be encoded depends on the surface area
available, which strongly favors large MBBs. Also through large
surface areas, the strength of intermolecular interactions with
neighbouring MBBs can be made suitably high, if one does not want to
rely on covalent links. (Arguably the largest link-strength per
cross-sectional area can be obtained by covalent bonds.) To obtain a
feel for how large the area of contact between a pair of MBBs should
be for good strength and specificity, one can imagine unfolding and
flattening out the convoluted surface of an enzymatic binding site
that recognizes a small molecule. The unfolded surface area is
uncomfortably large. Trying to devise MBBs in this size range causes
a lot of problems in terms of structural rigidity and very complex
syntheses.
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last updated Oct. 5 1996
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